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The Protagonist is not always meant to be evil, because in the Santa's Little Helper scenario, he helps the Neurax Worm to infect the entire world to bring happiness to Earth again, and he does not kill anyone in this scenario, nor causes any serious negative effects on the infected humans. If he is in fact some sort of diety, it's possible he blames humanity for their sins. He can even control directly some of the infected people or animals in the special plagues to use them to his advantage, like the Zombies, Apes, and Vampires.
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The Protagonist has the ability to control other things not related to diseases like Fake News or Board Games, implying that the protagonist might be beyond being a standard doctor or scientist to the point of possibly being a divine figure. It could be assumed that the Protagonist is some form of doctor or scientist in-universe, because he has total control over how the plague evolves and affects humanity, to the point of causing some events that lead to things happening like the US President nuking Russia or China.Īs it was told, none of the plagues have idea that the Protagonist is controlling them indirectly, not even the already fully-aware and intelligent Neurax Worm. The Protagonist is never referenced by the humans in-game, nor as responsible for the creation of the plagues, the game directly refers to them in some announcements, breaking the fourth wall, particularly in the scenario ones where he is referred directly as the person playing the game, and also in the tutorial. The Protagonist during the spreading of his plague.